Illumina gene expression beadchips of human ES cell lines, ES-derived cells, and normal liver (15 samples)
								
SAMPLES										
xls Sample number	publication sample number	sample name		
SAMPLE 1	1	HCT-116 rep1	
SAMPLE 2	2	HCT-116 rep2	
SAMPLE 3	3	H9 hESC rep 1	
SAMPLE 4	4	H9 hESC rep 2	
SAMPLE 5	5	H9 endoderm rep1	
SAMPLE 6	6	H9 endoderm rep2	
SAMPLE 7	11	H9 EB-derived cells rep1	
SAMPLE 8	12	H9 EB-derived cells rep2	
SAMPLE 9	13	BG02 hESC rep1			
SAMPLE 10	14	BG02 hESC rep2		
SAMPLE 11	15	BG02 EB-derived cells rep1	
SAMPLE 12	16	BG02 EB-derived cells rep2	
SAMPLE 13	19	human adult liver rep1		
SAMPLE 14	20	human adult liver rep2	
SAMPLE 15	NA	human adult liver rep3	

GENE EXPRESSION INFO
HumanRef v2 Expression BeadChips (Illumina) were used for mRNA expression.  Average array intensities were rank-invaiant normalized and log-transformed. Detection p-values are shown. 

Brunner, A. L., Johnson, D. S., Kim, S. W., Valouev, A., Reddy, T. E., Neff, N. F., Anton, E., Medina, C., Nguyen. L., Chiao, E., Oyolu, C. B., Schroth, G. P., Absher, D., Baker, J. C. and Myers, R. M.  (2009).  Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.  Genome Res.  In press.