Tags at HpaII/MspI cut sites

The number of Illumina sequence tags in the forward and reverse orientation for each of the 255,266 MspI/HpaII sites in hg18 that show 4 or more tags in our MspI control library.

column1	MspI/HpaII site coordinate (hg18)	
column2	MspI tag count (max of forward or reverse)
column3	HCT116 Msp I MethylSeq tag counts (Library1)
column4	HCT116 Hpa II MethylSeq tag counts (Library2)
column5	HCT116 Hpa II MethylSeq tag counts (Library3)
column6	HCT116 meDIPSeq tag counts (Library4)
column7	H9 hESC Hpa II MethylSeq tag counts (Library5)
column8	H9 endoderm Hpa II MethylSeq tag counts (Library6)
column9	H9 AFP+ hESC-derived cells Hpa II MethylSeq tag counts (Library7)
column10	H9 AFP- hESC-derived cell negative Hpa II MethylSeq tag counts (Library8)
column11	H9 embryoid bodies Hpa II MethylSeq tag counts (Library9)
column12	H9 conditioned medium Hpa II MethylSeq tag counts (Library10)
column13	H9 EB-derived cells Hpa II MethylSeq tag counts (Library11)
column14	BG02 hESC Hpa II MethylSeq tag counts (Library12)
column15	BG02 EB-derived cells Hpa II MethylSeq tag counts (Library13)
column16	BG02 EB-derived cells Hpa II MethylSeq tag counts (Library14)
column17	fetal liver 11 weeks Hpa II MethylSeq tag counts (Library15)
column18	fetal liver 24 weeks Hpa II MethylSeq tag counts (Library16)
column19	adult liver Hpa II MethylSeq tag counts (Library17)


tag counts example:[34,0] = [Tag count reverse, Tag count forward]


Brunner, A. L., Johnson, D. S., Kim, S. W., Valouev, A., Reddy, T. E., Neff, N. F., Anton, E., Medina, C., Nguyen. L., Chiao, E., Oyolu, C. B., Schroth, G. P., Absher, D., Baker, J. C. and Myers, R. M.  (2009).  Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.  Genome Res.  In press.